[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,725 items for (author: chi & x)

EMDB-28941:
HIV Env BG505_MD39_B11 SOSIP boosting trimer in complex with B11_d77.7 mouse Fab and RM20A3 Fab
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-28942:
HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized BG18HCgl knock-in mice
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-28945:
HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized wild type mice, and NHP monoclonal Fab RM20A3
Method: single particle / : Ozorowski G, Ward AB

EMDB-43190:
HIV Env BG505_MD39_B16 SOSIP boosting trimer in complex with B16_d77.5 mouse Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-36147:
Extracellular domain of gamma delta TCR
Method: single particle / : Xin W, Chi X, Huang B, Su Q, Zhou Q

EMDB-36149:
V gamma9 V delta2 TCR and CD3 complex in LMNG
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36152:
Vgamma5 Vdelta1 TCR complex (MPDI/TMDI)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36153:
Vgamma5 Vdelta1 TCR complex (MPDII/TMDII)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36155:
Vgamma5 Vdelta1 TCR complex (MPD/TMD)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36156:
Vgamma5 Vdelta1 T cell receptor complex
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-37904:
Vgamma5Vdelta1 EH TCR-CD3 complex
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-37914:
T cell receptor delta 2 gamma 9 with F283A, F290A, and F291A
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-37929:
T cell receptor delta 2 gamma 9 with TCRD TM domain chimera of TRAC
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39128:
T cell receptor V delta2 V gamma9 in GDN
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39359:
T cell receptor V delta2 V gamma9 in GDN (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Su Q, Zhou Q

EMDB-39361:
Vgamma5 Vdelta1 TCR complex (MPDI/TMDI, DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39362:
Vgamma5 Vdelta1 TCR complex (MPDII/TMDII, DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39363:
V gamma9 V delta2 TCR and CD3 complex in LMNG (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39367:
Vgamma5 Vdelta1 TCR-CD3 complex (EH mutant, DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8jbv:
Extracellular domain of gamma delta TCR
Method: single particle / : Xin W, Chi X, Huang B, Su Q, Zhou Q

PDB-8jc0:
V gamma9 V delta2 TCR and CD3 complex in LMNG
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8jcb:
Vgamma5 Vdelta1 T cell receptor complex
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8wxe:
Vgamma5Vdelta1 EH TCR-CD3 complex
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8wy0:
T cell receptor delta 2 gamma 9 with F283A, F290A, and F291A
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8wyi:
T cell receptor delta 2 gamma 9 with TCRD TM domain chimera of TRAC
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8yc0:
T cell receptor V delta2 V gamma9 in GDN
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39364:
T cell receptor delta 2 gamma 9 with F283A, F290A, and F291A (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39366:
T cell receptor delta 2 gamma 9 with TCRD TM domain chimera of TRAC (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39368:
Extracellular domain of Vgamma5 Vdelta1 TCR (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36849:
Nipah virus Attachment glycoprotein with 41-6 antibody fragment
Method: single particle / : Sun MM

PDB-8k3c:
Nipah virus Attachment glycoprotein with 41-6 antibody fragment
Method: single particle / : Sun MM

EMDB-34545:
Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR (resting state)
Method: single particle / : Chi P, Wang X, Li J, Li K, Zhang Y, Geng J, Wu J, Deng D

PDB-8h8f:
Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR (resting state)
Method: single particle / : Chi P, Wang X, Li J, Li K, Zhang Y, Geng J, Wu J, Deng D

EMDB-34544:
Structure of the dimeric Xenopus tropical acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (closed state)
Method: single particle / : Chi P, Wang X, Li J, Li K, Zhang Y, Geng J, Wu J, Deng D

PDB-8h8e:
Structure of the dimeric Xenopus tropical acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (closed state)
Method: single particle / : Chi P, Wang X, Li J, Li K, Zhang Y, Geng J, Wu J, Deng D

EMDB-36760:
Cryo-EM structure of conformation 1 of complex of Nipah virus attachment glycoprotein G with 1E5 neutralizing antibody
Method: single particle / : Sun MM

EMDB-36761:
Cryo-EM structure of conformation 2 of complex of Nipah virus attachment G with 1E5 neutralizing antibody
Method: single particle / : Sun M

EMDB-34543:
Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (intermediate state)
Method: single particle / : Chi P, Wang X, Li J, Li K, Zhang Y, Geng J, Wu J, Deng D

PDB-8h8d:
Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (intermediate state)
Method: single particle / : Chi P, Wang X, Li J, Li K, Zhang Y, Geng J, Wu J, Deng D

PDB-8yy8:
Fzd7 -Gs complex
Method: single particle / : Chen B, Xu L, Han GW, Xu F

EMDB-37320:
CryoEM structure of NaDC1 with Citrate
Method: single particle / : Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Shi T, Yang H, Wang Z, Yan R

EMDB-37321:
CryoEM structure of NaDC1 in apo state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37322:
NaDC1 with inhibitor ACA
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37323:
NaS1 with sulfate - IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37329:
NaS1 with sulfate in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37330:
NaS1 in IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37332:
NaS1 in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

PDB-8w6c:
CryoEM structure of NaDC1 with Citrate
Method: single particle / : Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Chen Y, Shi T, Yang H, Wang Z, Yan R

PDB-8w6d:
CryoEM structure of NaDC1 in apo state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6g:
NaDC1 with inhibitor ACA
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more